Preprints

Bibo ’Noah’ Feng, Ava J. Marks, Faith Kim, Mandar Naik, Tannin A. Schmidt, Khaled A. Elsaid, Gregory D. Jay, Brenda Rubenstein (2025). Lubricin’s Mucin Domain Has Strong Polyproline Type-II Helical Character.

DOI

Flavia Maria Galeazzi, Gabriel Monteiro Da Silva, Pablo Ricardo Arantes, Iz Varghese, Ananya Shukla, Brenda Marilyn Rubenstein (2025). FastConformation: A Standalone ML-Based Toolkit for Modeling and Analyzing Protein Conformational Ensembles at Scale.

DOI

Yash M. Lokare, Dingding Wei, Lucas Chan, Brenda Rubenstein, J. B. Marston (2024). Steady-State Statistics of Classical Nonlinear Dynamical Systems from Noisy Intermediate-Scale Quantum Devices.

DOI

Abid Khan, Prateek Vaish, Yaoqi Pang, Nikhil Kowshik, Michael S. Chen, Clay H. Batton, Grant M. Rotskoff, J. Wayne Mullinax, Bryan K. Clark, Brenda M. Rubenstein, And Norm M. Tubman (2024). Quantum Hardware-Enabled Molecular Dynamics via Transfer Learning.

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Gabriel Monteiro Da Silva, Kyle Lam, David C. Dalgarno, Brenda Rubenstein (2024). Compound Mutations in the Abl1 Kinase Cause Inhibitor Resistance by Shifting DFG Flip Mechanisms and Relative State Populations.

DOI

Tilas Kabengele, Yash M. Lokare, J. B. Marston, Brenda Rubenstein (2024). Modeling Stochastic Chemical Kinetics on Quantum Computers.

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